Tag: Python

• SSEC: Offshore Geodesy Workshop

  On Friday, May 3rd, 2024, the Offshore Geodesy project team attended a workshop led by SSEC Senior Software Engineer Don Setiawan. The workshop included Professor David Schmidt and Post Doctoral Researcher John DeSanto, as well as Jesse Hutchinson from Ocean Networks Canada and SSEC Research Scholar Madhav Kashyap. The group reviewed progress made on the…

• AutoDoc: Automated Documentation of Empirical Research 

  

  Partners Sebastian Musslick, Director, Autonomous Empirical Research Group  Younes Strittmatter, Research Assistant, Autonomous Empirical Research Group  SSEC Engineers Carlos Garcia Jurado Suarez, Senior Principal Software Engineer AutoRA is a collection of Python packages that together form a framework for closed loop empirical research. The packages allow users to set variables, weights, and actions to perform…

• ProSpecPy: Processing FTIR Spectroscopy Data

  

  Partners Elizabeth Phillips, Postdoctoral Scientist, Vincent Group @ Oxford University SSEC Engineers Anshul Tambay, Technical Program Manager  Hydrogenases are a group of enzymes that catalyze the reversible reduction of protons to hydrogen. They are extremely efficient, with turnover frequencies that rival the most efficient metal catalysts (Pt or Pd), using earth abundant metals (Ni or…

• SSEC Learnathon 2023

  

  By: Juliana Kilty, SSEC Student Assistant The Scientific Software Engineering Center (SSEC) held their first Learnathon from September 5th-7th this fall. Participants had the opportunity to explore topics in three general categories: tools, infrastructures, and processes. The Learnathon was conducted in tutorial style, led by SSEC team members with specific expertise. These informative presentations enabled…

• NoisePy: Ambient Field Seismology in Python 

  

  Partners Marine Denolle, Assistant Professor, UW Earth and Space Sciences  Yiyu Ni, PhD Student Kuan-Fu Feng, Postdoctoral Scholar SSEC Engineers Carlos Garcia Jurado Suarez, Senior Principal Software Engineer NoisePy is a software package used to image the Earth’s subsurface and monitor its changes through time. It performs large-scale cross-correlation of time series data recorded by networks…

• WetAI: Collaborative Neurobiology 

  

  Partners David Haussler, Scientific Director, UC Santa Cruz Genomics Institute, University of California, Santa Cruz.  Matt Elliot, PhD Student, UC Santa Cruz Genomics Institute  David Parks, PhD Student, UC Santa Cruz Department of Computer Science  Lon Blauvelt, Software Engineer, UC Santa Cruz Genomics Institute  SSEC Engineers Cordero Core, Senior Research Software Engineer  Don Setiawan, Senior…

• Offshore Geodesy: Advancing Research and Collaboration in Seafloor Deformation 

  

  Partners David Schmidt, Principal Investigator, University of Washington Dept. Of Earth and Space Sciences  John DeSanto, Post Doctoral Researcher, University of Washington Dept. Of Earth and Space Sciences  SSEC Engineers Don Setiawan, Senior Research Software Engineer, SSEC The Near-trench Community Geodetic Experiment, informally known as Offshore Geodesy, is a five-year NSF-funded project aimed at establishing…

• Python for Humanities: an Intro for Researchers

  

  By: Louisa Gaylord Last week the eScience Institute and UW Libraries Open Scholarship Commons co-hosted a workshop called “Python, your personal research assistant” for participants studying the humanities to explore the Python programming language and how to use it as a tool to aid in qualitative humanities work. Led by eScience Technical Education Specialist Naomi…

• Mapping Fungal Relationships in Trees

  

  By: Louisa Gaylord Korena Mafune is a 2021 Washington Research Foundation postdoctoral fellow in the University of Washington’s Department of Civil and Environmental Engineering, where she studies the symbiotic interactions among plants, fungi, and bacteria. She received her PhD from UW’s School of Environmental and Forest Sciences, where she studied the root-associated fungal communities of old-growth…

• Mapping Fungal Relationships in Trees

  

  By: Louisa Gaylord Korena Mafune is a 2021 Washington Research Foundation postdoctoral fellow in the University of Washington’s Department of Civil and Environmental Engineering, where she studies the symbiotic interactions among plants, fungi, and bacteria. She received her PhD from UW’s School of Environmental and Forest Sciences, where she studied the root-associated fungal communities of…