SSEC Publications
Our publications range from open-source software to peer-reviewed publications across several academic disciplines.
Software
Offshore Geodesy: GNATSS (Global Navigation Satellite Systems) software for processing seafloor horizontal positioning data. Learn more about the research this software was made for here.
Braingeneers / Wet AI: Innovative online platform designed to democratize neuroscience education and neuroscience experiments involving cerebral organoids by providing remote access and AI interactivity. Learn more here.
Echopype: Echopype leverages modern cloud computing technologies to support efficient computation of large quantities of ocean sonar data. It was made for this research.
NoisePy: Python package designed for fast and easy computation of ambient noise cross-correlation functions for noise monitoring and surface wave dispersion analysis for seismology research.
Caustics: GPU-accelerated, automatically differentiable, highly modular lensing pipeline of the future. Details available here.
Publications
Software Engineering Practices in Academia: Promoting the 3Rs—Readability, Resilience, and Reuse Andrew Connolly, David Beck, Vani Mandava, Sarah Stone et al
Hiring, Managing, and Retaining Data Scientists and Research Software Engineers in Academia David Beck, Sarah Stone et al
Internet-Connected Cortical Organoids for Project-Based Stem Cell and Neuroscience Education Cordero Core et al
Towards an open-source model for data and metadata standards Vani Mandava and Anshul Tambay et al
Interoperable and scalable echosounder data processing with Echopype Don Setiawan et al
Pathological microcircuits initiate epileptiform events in patient hippocampal slices Cordero Core et al
Caustics: A Python Package for Accelerated Strong Gravitational Lensing Simulations Don Setiawan, Cordero Core et al
Conferences
SciPy 2024 Tacoma, WA July 8-14, 2024.
Generative AI Copilot for Scientific Software: a RAG-Based Approach using OLMo
Echostack: A flexible and scalable open-source software suite for echosounder data processing
Xarray: Friendly, interactive, and scalable scientific data analysis
US-RSE Albuquerque, NM October 15-17, 2024.
Research Software Engineering as a Service: Approaches to research software engineering