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UID:265@escience.washington.edu
DTSTART;TZID=America/Los_Angeles:20250423T163000
DTEND;TZID=America/Los_Angeles:20250423T172000
DTSTAMP:20250418T181231Z
URL:https://escience.washington.edu/events/uw-data-science-seminar-lauren-
 buckley-and-cole-martin/
SUMMARY:UW Data Science Seminar: Lauren Buckley and Cole Martin
DESCRIPTION:Please join us for a UW Data Science Seminar featuring UW Biolo
 gy Professor Lauren Buckley and UW Chemical Engineering PhD Candidate Cole
  Martin on  Wednesday\, April 23rd from 4:30 to 5:20 p.m. PT. This seminar
  will feature two different research projects supported by the eScience Da
 ta Science and AI Accelerator. \n\n\nThe seminar will be held in Electrica
 l and Computer Engineering Building 125 – Campus Map.\n"Automating asse
 ssment of butterfly thermoregulatory traits to uncover responses to climat
 e variability and change"\n\nAbstract:  Heterogenous responses to climate 
 change highlight the need to identify the underlying organismal mechanisms
 . Rapid progress in disseminating images of museum specimens affords exten
 sive opportunities to assess shifts in functional traits across space and 
 time to uncover mechanisms. A single butterfly phenotype—wing coloration
 —shapes organismal responses to climate change at both acute and chronic
  timescales. Dark wings allow Pierid butterflies to absorb more sunlight t
 o heat up sufficiently for flight and associated fitness determining activ
 ities\, but dark wings can result in overheating and damage during thermal
  extremes. We present a workflow to download specimen images from reposito
 ries\, detect the bounding box of butterflies\, subset images to butterfli
 es with a standard resolution\, classify whether the image is of a dorsal 
 or ventral surface\, and segment the butterfly wings. A geometric analysis
  then evaluates grayscale within the thermally relevant wing regions. We f
 ind that seasonal plasticity and spatial differences in coloration enable 
 butterflies to balance flight capacity against risk of overheating. Shifts
  in wing coloration across decades depend on whether climate change poses 
 an opportunity or a stress. Our project demonstrates the potential to leve
 rage emerging computational tools and museum resources to identify the org
 anismal mechanisms mediating climate change responses.\n  Biography:  Laur
 en Buckley is a professor in Biology at the University of Washington. Her 
 research integrates modelling\, field and lab collection of ecological and
  physiological data\, and ecoinformatics to examine how biology (morpholog
 y\, physiology\, and life history) determines an organism’s ecological a
 nd evolutionary responses to climate change.  A focus is characterizing ho
 w organisms experience and respond to fine scale spatial and temporal envi
 ronmental variation. Much of her recent work has entailed repeating functi
 onal experiments and observations on montane insects after several decades
  of climate change to assess ecological and evolutionary responses. The Tr
 EnCh project builds computational and visualization tools to Translate Env
 ironmental Change into organismal responses and improve capacity for ecolo
 gical and evolutionary forecasting.\n\n\n"Quantification of HIV-1 DNA Isot
 hermal Amplification Images Using Resnet-18 Networks"\n\nAbstract:  Achiev
 ing the United Nations&#39\; goal of ending the HIV/AIDS epidemic by 2030 
 will require 30 million viral load tests annually—yet current diagnostic
 s fall short in speed\, scalability\, and accessibility. To address this n
 eed\, the Posner Research Group has developed a novel rapid HIV test based
  on isothermal nucleic acid quantification via time-resolved fluorescence 
 microscopy of nucleation puncta. Previous DNA quantification using counts 
 of discrete puncta has poor accuracy at high viral loads\, limiting the me
 thod’s dynamic range. This work leverages a ResNet-18 convolutional neur
 al network to overcome this barrier. By training a convolutional neural ne
 twork on both spatial and temporal imaging data\, we dramatically extend t
 he system’s dynamic range\, achieving 95% accuracy across clinically rel
 evant viral load classifications. This approach offers a promising path to
 ward fast\, low-cost\, and widely deployable quantitative diagnostics.\n\n
   Biography:  Cole Martin is a Ph.D. candidate in the Posner Research Grou
 p in the Department of Chemical Engineering at the University of Washingto
 n. His current research focuses on developing a quantitative HIV viral loa
 d test for use in low-resource settings. Prior to this\, he helped create 
 a rapid COVID-19 diagnostic that aimed to retain the sensitivity and speci
 ficity of PCR in the same readout format as lateral flow style antigen-bas
 ed tests. Before starting graduate school\, Cole worked at GlaxoSmithKline
  in vaccine adjuvant development. He holds bachelor’s degrees in chemica
 l engineering and biological engineering from Montana State University and
  a master’s in chemical engineering from the University of Washington.\n
 \n\nThe 2024-2025 seminars will be held in person\, and are free and open 
 to the public.
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